-
- 2005
Canadian Workshop on Bioinformatics. The presentation from the
first speaker (Ouelette) has lots of references to other material.
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Sockeye: A 3D Environment for Comparative Genomics. Stephen B. Montgomery,
Tamara Astakhova, Mikhail Bilenky, Ewan Birney, Tony Fu, Maik Hassel,
Craig Melsopp, Marcin Rak, A. Gordon Robertson,
Monica Sleumer, Asim S. Siddiqui, and Steven J.M. Jones.
Genome Res. Montgomery et al. 14 (5): 956.
Online link.
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Darling AC, Mau B, Blattner FR, Perna NT. Mauve: multiple alignment of
conserved genomic sequence with rearrangements. Genome Res. 2004
Jul;14(7):1394-403.
Online link.
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Brudno M, Malde S, Poliakov A, Do CB, Couronne O, Dubchak I, Batzoglou
S. Glocal alignment: finding rearrangements during alignment.
Bioinformatics. 2003;19 Suppl 1:i54-62.
Online link
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Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins
(Paperback Book)
by Andreas Baxevanis (Editor), B.F.Francis Ouellette (Editor)
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Algorithms for Alignment of Genome Sequences
PPT by M. Brudno, Stanford University.